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Bioinformatics Data Structures Framework and Overview
IEEE Project # P 1953: First Draft
Please send comments or suggestions to Stds-P1953@ieee.org
Date of Proposal: Oct 11, 2004
Revised:
Submitting Organization: BSC Bioinformatics Data Structures Framework under IEEE P 1953 Working Group
Point of Contact: Betty Cheng, Official P1953 recorder, < bcheng@smi.stanford.edu >
Objectives: The objectives are to provide a standard reference system for information on Bioinformatics data
structures that can be used to help support exchange and comparison of biological data sets in the life sciences disciplines.
P 1953, the proposed framework, will provide a consistent reference system or database framework for maintaining and
representing dynamic biological information. This information can then be used as needed as a consistent reference
source for aiding in the discovery, comparison, exchange, and integration of bioinformatics data sets throughout
the community. The IEEE successful mechanisms for announcing, incorporating and tracking changes will be used in all P1953 projects.
The IEEE-1953 Standard enumerates the various sub-domains of Bioinformatics for which detailed standards may be developed.
- 1953.0000 Bioinformatics Structures
- 1953.1000 Nomenclature & Taxonomy across several domains of biology
- 1953.2000 Data Bases
- 1953.2100 Genomics
- 1953.2200 Proteomics
- 1953.2300 Structural Proteomics
- 1953.2400 Transcriptomes
- 1953.2500 Gene Ontology (GO)
- 1953.2600 Structure Onlotogy (SO)
- 1953.3000 Biological Pathways
- 1953.4000 Pharmagemonics Knowledge Base
- 1953.4100 clinical outcome
- 1953.4200 pharmacodynamics and drug responses
- 1953.4300 pharmacokenetics
- 1953.4400 molecular and cellular functional assays
- 1953.4500 genotype
- 1953.5000 Drug Discovery
- 1953.6000 Medical Bioinformatics
- 1953.6100 Foundational Model of Anatomy a reference ontology in biomedical informatics.
- 1953.7000 Forensic Bioinformatics
- 1953.9000 Agriculture and Plant Bioinformatics
Each section such as 1953.XXXX may have benchmarks and or validation suites |
